PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009293001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 244aa    MW: 26949.4 Da    PI: 9.0983
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009293001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.3e-1580129355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSVIVT01009293001  80 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 129
                        9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.535143IPR001471AP2/ERF domain
SMARTSM003801.8E-4449IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-9945IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-91144IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1878138IPR016177DNA-binding domain
CDDcd000185.19E-2478139No hitNo description
Gene3DG3DSA:3.30.730.104.4E-1979137IPR001471AP2/ERF domain
SMARTSM003808.3E-3479143IPR001471AP2/ERF domain
PROSITE profilePS5103219.28279137IPR001471AP2/ERF domain
PRINTSPR003676.7E-58091IPR001471AP2/ERF domain
PfamPF008472.5E-1080129IPR001471AP2/ERF domain
PRINTSPR003676.7E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPFQSIDAIA VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQEE LEEMKNMSRQ  60
EYVAHLRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  120
DVAAIKFRGV NAVTNFDITR YDVERITASN TLIAGELAKR SKGKEPSREA IDYNPPQNSG  180
EAIQSEKASP DKTGPAMLFA KPPLASKLMG PASALSSWIP TSQLRTAAVS MAHLPLFAAW  240
NDT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.162231e-172bud| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3805171e-165FQ380517.1 Vitis vinifera clone SS0ACG53YG13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285467.21e-124PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-106ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLF6H1731e-124F6H173_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g08610.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-107AP2 family protein